Gene | Metrnl |
Chromosome | 11 |
Deletion Start | 121,702,611 |
Deletion End | 121,716,525 |
Deletion Size | 13,915 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 121,702,912 | 121,702,931 | CGCCCTAGCTCTGGTTTCAG |
TUP | 121,702,937 | 121,702,961 | TGGGACCCAGATGCCACCAACTCTT |
TUR | 121,702,963 | 121,702,982 | GAGAGTGGGCGTCTTCCGAG |
TDF | 121,716,162 | 121,716,181 | AGCCTGGTGCTAGAACTGGG |
TDP | 121,716,190 | 121,716,214 | TGCTGCTCTGACCCCTTAGGTCCCA |
TDR | 121,716,217 | 121,716,235 | ATGGGTCAGGGCATCCTTG |
PCR Primers
Primer | Sequence |
SU | GAACTTGCCAGCTCAGAGG |
SD | GTTCAGTGGGACAGATGCAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 330 bp | - | + | + |
TUF | TUR | 71 bp | + | + | - |
TDF | TDR | 74 bp | + | + | - |
NeoFwd | SD | 303 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10079C-A5 | VGB6 | C57BL/6NTac | |
10079C-H9 | VGB6 | C57BL/6NTac | |
10079C-G10 | VGB6 | C57BL/6NTac | |
10079C-F8 | VGB6 | C57BL/6NTac | |
10079C-D10 | VGB6 | C57BL/6NTac | |
10079C-C5 | VGB6 | C57BL/6NTac | |