Gene | Trem2 |
Chromosome | 17 |
Deletion Start | 48,346,540 |
Deletion End | 48,352,024 |
Deletion Size | 5,485 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 17
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 48,346,603 | 48,346,624 | CACAGGAGGGACCTACCTTCAG |
TUP | 48,346,628 | 48,346,647 | CACTGTCTTTTCCTCACCTT |
TUR | 48,346,649 | 48,346,668 | ACCCCAGCCATCTGCTCAAG |
TDF | 48,351,682 | 48,351,702 | TCTCCACAGGCAGGTTTCATC |
TDP | 48,351,706 | 48,351,733 | TGGGTCACCTCTAGCCTACCACCTTCCT |
TDR | 48,351,750 | 48,351,770 | GGGTGGGAAGGAGGTCTCTTG |
PCR Primers
Primer | Sequence |
SU | GAAAGCAGCTGACCTTTACTG |
SD | AGAAAGAGTAGGCAGTCCTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 348 bp | - | + | + |
TUF | TUR | 66 bp | + | + | - |
TDF | TDR | 89 bp | + | + | - |
NeoFwd | SD | 353 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10093A-A4 | VGB6 | C57BL/6NTac | |
10093B-B6 | VGB6 | C57BL/6NTac | |
10093B-C4 | VGB6 | C57BL/6NTac | |
10093B-H8 | VGB6 | C57BL/6NTac | |