Gene | Clec1a |
Chromosome | 6 |
Deletion Start | 129,451,712 |
Deletion End | 129,428,837 |
Deletion Size | 22,876 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 129,451,574 | 129,451,592 | TGTCTCCCCGAATCCAAGC |
TUP | 129,451,538 | 129,451,566 | TGCCTCATCTCACGATTTTCTCCAGAGCT |
TUR | 129,451,513 | 129,451,532 | CAGCCTTGCTCATGCCTAGG |
TDF | 129,428,946 | 129,428,969 | GGGACTGTATGACCATCTTCAATG |
TDP | 129,428,926 | 129,428,944 | AAAGGCTTACTCTAAGGAC |
TDR | 129,428,904 | 129,428,924 | CACACCTCCTCAGCTCTTTGC |
PCR Primers
Primer | Sequence |
SU | TCACATCCCCACCTTGCAAC |
SD | TGGGGCTAGTCGGAGGTTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 450 bp | - | + | + |
TUF | TUR | 80 bp | + | + | - |
TDF | TDR | 66 bp | + | + | - |
NeoFwd | SD | 322 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10113H-D4 | VGB6 | C57BL/6NTac | |
10113H-H6 | VGB6 | C57BL/6NTac | |