Gene | Lrfn4 |
Chromosome | 19 |
Deletion Start | 4,614,501 |
Deletion End | 4,612,057 |
Deletion Size | 2,445 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 19
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 4,614,346 | 4,614,365 | ACAGGCGCACAGTTGAACTG |
TUP | 4,614,315 | 4,614,338 | CCGACAACTTCATCCAGGCCCTGG |
TUR | 4,614,286 | 4,614,306 | CCCTGTCATGTTGCGGAAGTC |
TDF | 4,612,517 | 4,612,536 | CGACCTCACGGCCACTAGAC |
TDP | 4,612,488 | 4,612,513 | TGGGCTGTGCCCACTTCTCTACGCTA |
TDR | 4,612,445 | 4,612,463 | CCAGCACATGGGCCTGTAG |
PCR Primers
Primer | Sequence |
SU | GGGAAATGTGACCTTTACTC |
SD | AACAAGACTCCCTCTTGGTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 324 bp | - | + | + |
TUF | TUR | 80 bp | + | + | - |
TDF | TDR | 92 bp | + | + | - |
NeoFwd | SD | 341 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10115A-A2 | VGB6 | C57BL/6NTac | |
10115A-A9 | VGB6 | C57BL/6NTac | |
10115A-A11 | VGB6 | C57BL/6NTac | |
10115A-B2 | VGB6 | C57BL/6NTac | |
10115A-B8 | VGB6 | C57BL/6NTac | |
10115A-D7 | VGB6 | C57BL/6NTac | |