Gene | Gpnmb |
Chromosome | 6 |
Deletion Start | 49,036,708 |
Deletion End | 49,056,314 |
Deletion Size | 19,607 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 49,036,847 | 49,036,866 | GCCCTTTGACTGGAGTTTGG |
TUP | 49,036,878 | 49,036,904 | CACTCCCAGCATTTGGAACAGACCCTG |
TUR | 49,036,913 | 49,036,933 | TGCTCTCCGTGAGTCCTAAGC |
TDF | 49,056,194 | 49,056,212 | CCCCAGGAACACGGTCAAG |
TDP | 49,056,221 | 49,056,246 | CCTGAGTGTTCTCCTCAGTCACGCGA |
TDR | 49,056,254 | 49,056,274 | TCCTGGTCTCCTCGGAAGAAC |
PCR Primers
Primer | Sequence |
SU | GCAAGTGACTCATGAGCACG |
SD | GAGGCATCTGTGGTATCTCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 319 bp | - | + | + |
TUF | TUR | 87 bp | + | + | - |
TDF | TDR | 81 bp | + | + | - |
NeoFwd | SD | 378 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10131A-A10 | VGB6 | C57BL/6NTac | |
10131A-F10 | VGB6 | C57BL/6NTac | |
10131A-H2 | VGB6 | C57BL/6NTac | |
10131A-H10 | VGB6 | C57BL/6NTac | |
10131A-H11 | VGB6 | C57BL/6NTac | |
10131A-D7 | VGB6 | C57BL/6NTac | |