Gene | Ggnbp1 |
Chromosome | 17 |
Deletion Start | 27,029,444 |
Deletion End | 27,036,216 |
Deletion Size | 6,773 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 17
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 27,029,479 | 27,029,498 | CCCTCGGTCACGGATCTTAG |
TUP | 27,029,500 | 27,029,523 | CTGCTCCTCCATGCTGCGCTTTCT |
TUR | 27,029,525 | 27,029,544 | TTACTCCCCACCAGGTTTCG |
TDF | 27,035,665 | 27,035,684 | GGCCTCTCCGGTAGCAAGTG |
TDP | 27,035,687 | 27,035,710 | TCAGAGTCCCACGTCTCCCCACCA |
TDR | 27,035,727 | 27,035,747 | CCTTAGCCCGTGGTCCTAAGG |
PCR Primers
Primer | Sequence |
SU | CCGCTTTCCTTCCAGTAGAC |
SD | AGCCCAGGAGGTGAATGCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 290 bp | - | + | + |
TUF | TUR | 66 bp | + | + | - |
TDF | TDR | 83 bp | + | + | - |
NeoFwd | SD | 255 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10175D-E3 | VGB6 | C57BL/6NTac | |
10175E-B1 | VGB6 | C57BL/6NTac | |
10175D-C3 | VGB6 | C57BL/6NTac | |