Gene | Alg2 |
Chromosome | 4 |
Deletion Start | 47,474,283 |
Deletion End | 47,471,539 |
Deletion Size | 2,745 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 4
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 47,474,143 | 47,474,165 | AGGAGTACGGCTGTGATGTGAAG |
TUP | 47,474,119 | 47,474,142 | ATATGGACCGCGCACTACGACCCG |
TUR | 47,474,093 | 47,474,110 | TCGCGGGTCTCGATGAAG |
TDF | 47,472,073 | 47,472,090 | TCTGCCCTTGGCACTGAG |
TDP | 47,472,048 | 47,472,071 | TCCTTGGTGCAGCTTCGGAATCGG |
TDR | 47,471,999 | 47,472,017 | AACCACCGGCCATGAAGAG |
PCR Primers
Primer | Sequence |
SU | GTCAGGCATTTTCTTAGCGC |
SD | GGAATGATTACAGCATTAAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 280 bp | - | + | + |
TUF | TUR | 73 bp | + | + | - |
TDF | TDR | 92 bp | + | + | - |
NeoFwd | SD | 303 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10264A-B5 | VGB6 | C57BL/6NTac | |
10264D-C11 | VGB6 | C57BL/6NTac | |
10264D-H10 | VGB6 | C57BL/6NTac | |