Gene | Bpifa1 |
Chromosome | 2 |
Deletion Start | 154,143,750 |
Deletion End | 154,148,090 |
Deletion Size | 4,341 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 154,144,111 | 154,144,132 | AAGGCAGGTATGAGGGAGGAAG |
TUP | 154,144,136 | 154,144,161 | AGGTAAGGACCTGCAGTTGGCAGACA |
TUR | 154,144,174 | 154,144,197 | TGAGAGCTGTAAAGAGGGAAAGAG |
TDF | 154,147,926 | 154,147,945 | CTGAGCTGGCTGGAGGAGAC |
TDP | 154,147,957 | 154,147,981 | CCAACATTCCTGGGAGTGGTGAGCA |
TDR | 154,147,989 | 154,148,011 | GGCATATTCTGGTGGTGAAGGAG |
PCR Primers
Primer | Sequence |
SU | AAACTGCCTAGAGTCGCTAG |
SD | GTCTTTCATTACAGTGATAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 19593 bp | - | + | + |
TUF | TUR | 87 bp | + | + | - |
TDF | TDR | 86 bp | + | + | - |
NeoFwd | SD | 238 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10389A-D7 | VGB6 | C57BL/6NTac | |
10389A-D10 | VGB6 | C57BL/6NTac | |
10389A-A5 | VGB6 | C57BL/6NTac | |