Gene | Abpg |
Chromosome | 7 |
Deletion Start | 33,944,961 |
Deletion End | 33,943,166 |
Deletion Size | 1,796 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 7
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 33,944,411 | 33,944,432 | GCCAGAACTTACGGAGCAATAC |
TUP | 33,944,382 | 33,944,408 | ACTCTAAGGAGGACCTTCCTGCATGGT |
TUR | 33,944,339 | 33,944,359 | AGGCCACCCTTTCAGCTACAG |
TDF | 33,943,438 | 33,943,457 | GCTTCCTCCTGAAGGCTGTG |
TDP | 31,359,282 | 31,359,303 | TGGGCTCCAGTTCCCTTGAGGC |
TDR | 33,943,383 | 33,943,406 | GCAATGATTCAGTTCTCCAGCAAC |
PCR Primers
Primer | Sequence |
SU | AGGAACAAACAACTCTCCAG |
SD | GGATGAACTGGACAGTCAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 94 bp | + | + | - |
TDF | TDR | 75 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10506A-A11 | VGB6 | C57BL/6NTac | |
10506A-G5 | VGB6 | C57BL/6NTac | |
10506B-B4 | VGB6 | C57BL/6NTac | |
10506B-A4 | VGB6 | C57BL/6NTac | |