Gene | Hes2 |
Chromosome | 4 |
Deletion Start | 152,159,654 |
Deletion End | 152,160,581 |
Deletion Size | 928 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 4
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 152,159,753 | 152,159,774 | GCGATGGCGGTCTTTCTAACTG |
TUP | 152,159,775 | 152,159,794 | TGGTCTCAGCGCCTTCTCGC |
TUR | 152,159,804 | 152,159,822 | CAGCAGCGGCTTTAGGTTC |
TDF | 152,160,262 | 152,160,283 | CTCCAGTTTGCACCGTACTCAG |
TDP | 152,160,285 | 152,160,309 | ACCTGAGCCTCACATCTGCTCCCTG |
TDR | 152,160,341 | 152,160,359 | GCCAGACAGGCTCGGTAAC |
PCR Primers
Primer | Sequence |
SU | CGCTGGCCCGACTCAATGG |
SD | CACCACTTCTTCCAGTCTGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 328 bp | - | + | + |
TUF | TUR | 70 bp | + | + | - |
TDF | TDR | 98 bp | + | + | - |
NeoFwd | SD | 317 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10681B-C11 | VGB6 | C57BL/6NTac | |
10681C-H2 | VGB6 | C57BL/6NTac | |