Gene | Serpinb9b |
Chromosome | 13 |
Deletion Start | 33,029,446 |
Deletion End | 33,040,073 |
Deletion Size | 10,628 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 13
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 33,029,486 | 33,029,506 | GGCACCTTTGCCATCCATCTA |
TUP | 33,029,508 | 33,029,537 | TGAAGATGTTATGTCAAAGCAACCCTTCCA |
TUR | 33,029,591 | 33,029,610 | GTCTGCTCCTTTGCACCCAG |
TDF | 33,039,980 | 33,040,000 | GTGAGTTCACACTCCAGCATC |
TDP | 33,040,002 | 33,040,024 | CCACCACTCCTACAGCTCCGTGA |
TDR | 33,040,025 | 33,040,043 | TCCCTCTGTTTGCCCATTC |
PCR Primers
Primer | Sequence |
SU | CAGAGTTGCTGAAGGCAGG |
SD | CTTGTACGGTGAAATCACTTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 549 bp | - | + | + |
TUF | TUR | 125 bp | + | + | - |
TDF | TDR | 64 bp | + | + | - |
NeoFwd | SD | 252 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10690C-B4 | VGB6 | C57BL/6NTac | |
10690D-F7 | VGB6 | C57BL/6NTac | |