Gene | Lrrn3 |
Chromosome | 12 |
Deletion Start | 41,454,313 |
Deletion End | 41,452,190 |
Deletion Size | 2,124 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 12
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 41,453,683 | 41,453,705 | GGACATGAACTTTCAGCCTCTTG |
TUP | 41,453,658 | 41,453,682 | TCAAGCTTCGCAGCCTGGTTATAGC |
TUR | 41,453,626 | 41,453,647 | CGTCGTCTGGTATTTCCGTGAG |
TDF | 41,453,087 | 41,453,108 | AGGCCAGAATGTTCGGCAAGTG |
TDP | 41,453,055 | 41,453,082 | TCAGGGATATGATGGAAATTTGCCTCCC |
TDR | 41,453,021 | 41,453,043 | CAGGTCAGAAGGAAAGCTCTCAG |
PCR Primers
Primer | Sequence |
SU | ATTGCTCCATATCCTGTGAC |
SD | AAATGTTCACGTTTAACTGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 422 bp | - | + | + |
TUF | TUR | 80 bp | + | + | - |
TDF | TDR | 88 bp | + | + | - |
NeoFwd | SD | 364 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10716E-F9 | VGB6 | C57BL/6NTac | |
10716E-E1 | VGB6 | C57BL/6NTac | |
10716D-H8 | VGB6 | C57BL/6NTac | |