Gene | Gpt |
Chromosome | 15 |
Deletion Start | 76,696,843 |
Deletion End | 76,699,527 |
Deletion Size | 2,685 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 15
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 76,697,024 | 76,697,042 | TGCCTTGGGCCACTTACTG |
TUP | 76,697,043 | 76,697,068 | CCCTTCTGCTAAACTTGGGCTGCTGA |
TUR | 76,697,088 | 76,697,109 | CTACTGCCTTTGTCCCACATTC |
TDF | 76,698,679 | 76,698,696 | TCCCAGACCAGCCTCAAC |
TDP | 76,698,697 | 76,698,718 | TCATGCTCTCCTGGGCAGGTGC |
TDR | 76,698,721 | 76,698,741 | TCCACATAGCCACCACGAAAC |
PCR Primers
Primer | Sequence |
SU | TACCAACTCCCTCTGGCAC |
SD | AGATGCCGTTTCCAGTGTCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 339 bp | - | + | + |
TUF | TUR | 86 bp | + | + | - |
TDF | TDR | 63 bp | + | + | - |
NeoFwd | SD | 300 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10778A-A12 | VGB6 | C57BL/6NTac | |
10778B-D1 | VGB6 | C57BL/6NTac | |
10778B-F7 | VGB6 | C57BL/6NTac | |
10778B-G8 | VGB6 | C57BL/6NTac | |
10778C-D6 | VGB6 | C57BL/6NTac | |
10778C-E6 | VGB6 | C57BL/6NTac | |