Gene | Alg10b |
Chromosome | 15 |
Deletion Start | 90,228,486 |
Deletion End | 90,224,441 |
Deletion Size | 4,046 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 15
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 90,224,647 | 90,224,667 | CCAACCTGTGCCTTTCCTCTC |
TUP | 90,224,668 | 90,224,690 | CCCGTCAGCCCTCCCAGACTTAA |
TUR | 90,224,694 | 90,224,713 | CACTAGGCAGCTCCCTTCAC |
TDF | 90,227,671 | 90,227,692 | GGTGTACGCCATGTCCCTAAAG |
TDP | 90,227,697 | 90,227,723 | TGAGAATGCTCTTCCTGTTGACCTGGC |
TDR | 77,959,682 | 77,959,701 | CAGGCATTCTCCACGCTCAG |
PCR Primers
Primer | Sequence |
SU | CAGAGAAACCGTCCCGTCG |
SD | TGGGTACGACAATATCTGGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 4409 bp | - | + | + |
TUF | TUR | 67 bp | + | + | - |
TDF | TDR | 12268011 bp | + | + | - |
NeoFwd | SD | 4391 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10825A-D5 | VGB6 | C57BL/6NTac | |
10825A-F6 | VGB6 | C57BL/6NTac | |
10825A-H9 | VGB6 | C57BL/6NTac | |