Gene | Glycam1 |
Chromosome | 15 |
Deletion Start | 103,565,028 |
Deletion End | 103,562,873 |
Deletion Size | 2,156 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 15
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 103,564,404 | 103,564,423 | TGCACACCTGCATTTCCAAC |
TUP | 103,564,373 | 103,564,401 | TCAGGAAGCAGAAGCAGAACTACTAAGCA |
TUR | 103,564,320 | 103,564,342 | AGCTTCCTCAACCTCCCTTACTC |
TDF | 103,563,251 | 103,563,271 | AGAGACCACAAGACCCACCAC |
TDP | 103,563,225 | 103,563,250 | CTCAGCTGGTATGAGCCAGGGAAGAA |
TDR | 103,563,201 | 103,563,220 | TTACCACCTCCCAAGACATC |
PCR Primers
Primer | Sequence |
SU | ACACCATGGCAGTAGCTAGG |
SD | ACTGGGCTTGTAAACTGAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 391 bp | - | + | + |
TUF | TUR | 104 bp | + | + | - |
TDF | TDR | 71 bp | + | + | - |
NeoFwd | SD | 354 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10916A-F3 | VGB6 | C57BL/6NTac | |
10916A-G2 | VGB6 | C57BL/6NTac | |