Gene | Cldn18 |
Chromosome | 9 |
Deletion Start | 99,709,945 |
Deletion End | 99,692,645 |
Deletion Size | 17,301 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 99,709,648 | 99,709,666 | GCAATCCGCCTCAGGTGTG |
TUP | 99,709,624 | 99,709,647 | ACTGTGGCAGCCTTGGCTCCCAAT |
TUR | 99,709,558 | 99,709,582 | TCTCCTATCTCCTACATGGCTACTG |
TDF | 99,692,911 | 99,692,930 | GCACAGGTGTTCATGGACTC |
TDP | 99,692,883 | 99,692,909 | TTCCTTGCCTTTCAGCTTCAAAGCTGT |
TDR | 99,692,863 | 99,692,882 | GGCCAGAGGCATGGTAAGAC |
PCR Primers
Primer | Sequence |
SU | AGGGGAGAGTAGGTTCGTCC |
SD | AAAATCGACCATCAGCAGGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 399 bp | - | + | + |
TUF | TUR | 109 bp | + | + | - |
TDF | TDR | 68 bp | + | + | - |
NeoFwd | SD | 402 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11015B-H4 | VGB6 | C57BL/6NTac | |
11015B-G8 | VGB6 | C57BL/6NTac | |
11015C-H11 | VGB6 | C57BL/6NTac | |
11015C-H3 | VGB6 | C57BL/6NTac | |
11015D-E7 | VGB6 | C57BL/6NTac | |
11015D-F3 | VGB6 | C57BL/6NTac | |