Gene | Sh3bgrl3 |
Chromosome | 4 |
Deletion Start | 134,128,660 |
Deletion End | 134,127,690 |
Deletion Size | 971 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 4
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 134,128,285 | 134,128,303 | CCTCGCCGAGTCTAGCTTC |
TUP | 134,128,259 | 134,128,283 | CTGTCATGCACAGAACTTGCCCGTC |
TUR | 134,128,214 | 134,128,238 | AGGGTCCAAGGATAGACAGGTAAAC |
TDF | 134,128,067 | 134,128,087 | AGATCAAGTCCCAGCAGAGTG |
TDP | 134,128,040 | 134,128,063 | TGACCCGCATCCTAGATGGGAAGA |
TDR | 134,127,988 | 134,128,007 | TCATCTCGAAGGGCGTTGTC |
PCR Primers
Primer | Sequence |
SU | TTCTGCCTTTTAGCCGGTCC |
SD | TAATTGTCTCTAGGGCACTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 397 bp | - | + | + |
TUF | TUR | 90 bp | + | + | - |
TDF | TDR | 100 bp | + | + | - |
NeoFwd | SD | 362 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11026B-A12 | VGB6 | C57BL/6NTac | |
11026B-A1 | VGB6 | C57BL/6NTac | |