Gene | Ccdc115 |
Chromosome | 1 |
Deletion Start | 34,439,335 |
Deletion End | 34,437,496 |
Deletion Size | 1,840 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 1
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 34,438,830 | 34,438,853 | GCATGTAAGTCTCCTTTCCACCTG |
TUP | 34,438,804 | 34,438,829 | TCAGCCCTTACTCAGCGCTAAAGACA |
TUR | 34,438,735 | 34,438,753 | CTCCAGCTCAGACGCTCTC |
TDF | 34,437,754 | 34,437,773 | TTTGGTTCCTCACAGTCTGC |
TDP | 34,437,726 | 34,437,747 | CCCAAGCCAGCTTCCGGGATGG |
TDR | 34,437,692 | 34,437,713 | GCCTCCCTAGCCAGTACAATAG |
PCR Primers
Primer | Sequence |
SU | GGTAGCCATCGGATTCGAG |
SD | TTCACTATCCCAGATGGCTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 369 bp | - | + | + |
TUF | TUR | 119 bp | + | + | - |
TDF | TDR | 82 bp | + | + | - |
NeoFwd | SD | 377 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11032B-C1 | VGB6 | C57BL/6NTac | |
11032B-F9 | VGB6 | C57BL/6NTac | |