Gene | Rtn4ip1 |
Chromosome | 10 |
Deletion Start | 43,902,248 |
Deletion End | 43,928,456 |
Deletion Size | 26,209 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 10
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 43,903,171 | 43,903,193 | TTCCTGTATCCTTCTTGCTGTCC |
TUP | 43,903,196 | 43,903,222 | CGGTTCACAGCTTCTGTTATAGGCCCA |
TUR | 43,903,228 | 43,903,248 | GAGTTCTGCTCTGTTGCTTGG |
TDF | 43,928,358 | 43,928,377 | TTGCTCGAAAGATGCCAGTG |
TDP | 43,928,378 | 43,928,403 | AACTTGTGCGGAAGCTTGGAGCAGAT |
TDR | 43,928,404 | 43,928,426 | CCCAACGTGTAATCAATGACCTC |
PCR Primers
Primer | Sequence |
SU | ACGTGGGGAGCACAGTAGC |
SD | CTTCTGATAAGCCAGCAACAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 370 bp | - | + | + |
TUF | TUR | 78 bp | + | + | - |
TDF | TDR | 69 bp | + | + | - |
NeoFwd | SD | 303 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11056B-A9 | VGB6 | C57BL/6NTac | |
11056B-B3 | VGB6 | C57BL/6NTac | |
11056B-B4 | VGB6 | C57BL/6NTac | |