Gene | Dbndd1 |
Chromosome | 8 |
Deletion Start | 123,515,260 |
Deletion End | 123,506,625 |
Deletion Size | 8,636 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 8
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 123,514,659 | 123,514,680 | TTGGAAGGGAAGGTGTGAATGG |
TUP | 123,514,637 | 123,514,658 | TGTGCTCCTTCCTCGGCCTCTC |
TUR | 123,514,590 | 123,514,609 | GCAGACCCTGCGGTAAGATG |
TDF | 123,507,408 | 123,507,428 | CCTCCAGCCTGCATGTGTATG |
TDP | 123,507,382 | 123,507,406 | TGAGTCAGGAGATGGCCCGTGACAT |
TDR | 123,507,347 | 123,507,366 | GGAGTTGGGCTTCCACTCTG |
PCR Primers
Primer | Sequence |
SU | ACCTGTGCTGCTGGCTGCT |
SD | AAGACCCAGACCACTGCTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 329 bp | - | + | + |
TUF | TUR | 91 bp | + | + | - |
TDF | TDR | 82 bp | + | + | - |
NeoFwd | SD | 331 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11129B-G6 | VGB6 | C57BL/6NTac | |
11129B-B2 | VGB6 | C57BL/6NTac | |