Gene | Armcx6 |
Chromosome | X |
Deletion Start | 134,750,077 |
Deletion End | 134,749,155 |
Deletion Size | 923 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome X
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 134,750,013 | 134,750,032 | GGAGCTGGTGCCTGTTACTG |
TUP | 134,749,980 | 134,750,007 | ACAAACTGACCATGGGAAGAAGTGAGGG |
TUR | 134,749,923 | 134,749,945 | TCATCCAGATCCTGTCCATCTTC |
TDF | 134,749,699 | 134,749,723 | TCCTTCACTTGTATTCTTGACCTGA |
TDP | 134,749,676 | 134,749,697 | CAAGTGTGTTTCCACTCAAAGA |
TDR | 134,749,636 | 134,749,658 | GGGAAAAGCCAGCATTTATGTTC |
PCR Primers
Primer | Sequence |
SU | GGTGGGTAGGAGGAGGAGAG |
SD | GACAGGGAGATCACCACAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 110 bp | + | + | - |
TDF | TDR | 88 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11210C-C12 | VGB6 | C57BL/6NTac | |
11210C-E7 | VGB6 | C57BL/6NTac | |
11210C-G2 | VGB6 | C57BL/6NTac | |
11210C-H5 | VGB6 | C57BL/6NTac | |