Gene | Slc45a3 |
Chromosome | 1 |
Deletion Start | 131,976,944 |
Deletion End | 131,981,808 |
Deletion Size | 4,884 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 1
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 131,977,831 | 131,977,851 | ATGCCTCTTTGGCCTCCTCAC |
TUP | 131,977,858 | 131,977,881 | TTTCCTCATCTGCATGGCAGCCAC |
TUR | 131,977,889 | 131,977,907 | GTACTGCCTCCTCCGTCAC |
TDF | 131,981,587 | 131,981,606 | CCTGTTCATGGGCTCCATTG |
TDP | 131,981,608 | 131,981,631 | CCAGCTGAGCCACTCTGTCACTGC |
TDR | 131,981,692 | 131,981,713 | GGCCAAGTCGTTCTTGTCAAAC |
PCR Primers
Primer | Sequence |
SU | GAATGGATTGGCTCAGCTTG |
SD | GGTTCCTCCTTCCAACTTCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 598 bp | - | + | + |
TUF | TUR | 77 bp | + | + | - |
TDF | TDR | 127 bp | + | + | - |
NeoFwd | SD | 450 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11303A-F1 | VGB6 | C57BL/6NTac | |
11303A-A12 | VGB6 | C57BL/6NTac | |
11303A-H12 | VGB6 | C57BL/6NTac | |