Gene | Prkcdbp |
Chromosome | 7 |
Deletion Start | 105,482,156 |
Deletion End | 105,480,788 |
Deletion Size | 1,369 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 7
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 105,481,675 | 105,481,694 | CCGTCCGCATCTCCACATTC |
TUP | 105,481,655 | 105,481,673 | TGACCCAGCGTGCTGCCCT |
TUR | 105,481,586 | 105,481,608 | GGGAGTGAGAAAGGGATAAGGTC |
TDF | 105,481,086 | 105,481,105 | GAAGAGGAGCCAGTGGAGTC |
TDP | 105,481,056 | 105,481,075 | CGGCTGCGCCGCACTGGTTT |
TDR | 105,480,999 | 105,481,017 | GTGGGCTGTGCTGCTTTAC |
PCR Primers
Primer | Sequence |
SU | CAGGACTGTCTTACTCGCAG |
SD | TGGTGAACCTAAATTAGGCTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 337 bp | - | + | + |
TUF | TUR | 109 bp | + | + | - |
TDF | TDR | 107 bp | + | + | - |
NeoFwd | SD | 261 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11448A-A5 | VGB6 | C57BL/6NTac | |
11448A-A12 | VGB6 | C57BL/6NTac | |
11448A-C3 | VGB6 | C57BL/6NTac | |
11448A-D8 | VGB6 | C57BL/6NTac | |
11448A-C6 | VGB6 | C57BL/6NTac | |