Gene | Nat1 |
Chromosome | 8 |
Deletion Start | 67,490,977 |
Deletion End | 67,491,923 |
Deletion Size | 947 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 8
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 67,491,333 | 67,491,352 | TGTGGATTCCGCCTATGGAG |
TUP | 67,491,355 | 67,491,379 | TCCTACCAGATGTGGGAGCCTCTGG |
TUR | 67,491,393 | 67,491,412 | GCACCTGAGGCTGATCCTTC |
TDF | 67,491,607 | 67,491,629 | TCGCCAGCATCTGTGTTTGTAAG |
TDP | 67,491,632 | 67,491,658 | CATCGTTCTGTTCCTTGCAGACCTCGG |
TDR | 67,491,664 | 67,491,685 | TGGAGCCCACTAAACAGTGAAC |
PCR Primers
Primer | Sequence |
SU | TCGACATGGCCACTATGTTC |
SD | TGGTTTCTTGTAAACCATGGAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 80 bp | + | + | - |
TDF | TDR | 79 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11571A-A3 | VGB6 | C57BL/6NTac | |
11571A-D5 | VGB6 | C57BL/6NTac | |
11571A-H3 | VGB6 | C57BL/6NTac | |
11571A-F10 | VGB6 | C57BL/6NTac | |
11571A-F2 | VGB6 | C57BL/6NTac | |
11571A-H9 | VGB6 | C57BL/6NTac | |