Gene | Msto1 |
Chromosome | 3 |
Deletion Start | 88,913,873 |
Deletion End | 88,909,678 |
Deletion Size | 4,196 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 88,913,618 | 88,913,635 | ACAGAACAGGCCGGACAC |
TUP | 88,913,592 | 88,913,617 | TGCATGGCCAGGAAACCTATACGCCT |
TUR | 88,913,553 | 88,913,573 | CACCATCGCCTCACCTTTCAG |
TDF | 88,910,643 | 88,910,663 | GTGGTGCTCAGAGGCATAGAC |
TDP | 88,910,615 | 88,910,640 | AGCTAGCCACACCAGGTAAAGACTGC |
TDR | 88,910,561 | 88,910,581 | GCGTGCTAGGGAAACAAAGAC |
PCR Primers
Primer | Sequence |
SU | ACAGAAGCAGGTGAGAGAAC |
SD | TGAGGACAGAGCAAGAATGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 370 bp | - | + | + |
TUF | TUR | 83 bp | + | + | - |
TDF | TDR | 103 bp | + | + | - |
NeoFwd | SD | 324 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11662A-C1 | VGB6 | C57BL/6NTac | |
11662A-C12 | VGB6 | C57BL/6NTac | |
11662A-D12 | VGB6 | C57BL/6NTac | |
11662A-A9 | VGB6 | C57BL/6NTac | |
11662A-H10 | VGB6 | C57BL/6NTac | |
11662A-B3 | VGB6 | C57BL/6NTac | |