11665   Afp     Status: ES cell colonies screened / QC positives

GeneAfp
Chromosome5
Deletion Start90,490,784
Deletion End90,508,496
Deletion Size17,713
Genome Build38
MGI IDMGI:87951
NCBI Gene ID11576
BAC ID291J12
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 5

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF90,491,57790,491,598GTCTGGACAGGTGGTTCCTAAC
TUP90,491,60390,491,630TGGCAGTTCTAAGACTTCATGGCTTGGG
TUR90,491,64090,491,659CCGGGAAAGCAATCGTTGTG
TDF90,507,63190,507,650GTGCTTCAGGCTGAGAAGTG
TDP90,507,65190,507,674TAAGGGCTAACCTTGGCACGGAGC
TDR90,507,73090,507,748AGCCGCACCTTCCCAGAAC

PCR Primers

PrimerSequence
SUCAGTTTAGATGGTGAAGAAC
SDTAAGCCAAAAGGCTCACACC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev407 bp-++
TUFTUR83 bp++-
TDFTDR118 bp++-
NeoFwdSD376 bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
11665A-D11VGB6C57BL/6NTac
11665A-E10VGB6C57BL/6NTac
11665A-F3VGB6C57BL/6NTac