Gene | 0610031J06Rik |
Chromosome | 3 |
Deletion Start | 88,325,085 |
Deletion End | 88,328,387 |
Deletion Size | 3,303 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 88,325,378 | 88,325,398 | GTCCTGCTTTCTGACGATGTC |
TUP | 88,325,403 | 88,325,427 | CCATGGCTCAGCCATTGTAGCCCAG |
TUR | 88,325,456 | 88,325,477 | CAGAGGGCTCAGAGCTAACAAG |
TDF | 88,327,426 | 88,327,448 | CCTACCGAGTGCTGGGATTAAAG |
TDP | 88,327,454 | 88,327,476 | CGCCATCACGCCTGGCTATGGTC |
TDR | 88,327,534 | 88,327,554 | CACAGATGGCAGGCAATAGAC |
PCR Primers
Primer | Sequence |
SU | TTCACCAGAGGTGATGTAGG |
SD | GGGAAATGTCTATTTCATGCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 100 bp | + | + | - |
TDF | TDR | 129 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11715A-A2 | VGB6 | C57BL/6NTac | |
11715A-H7 | VGB6 | C57BL/6NTac | |
11715A-E3 | VGB6 | C57BL/6NTac | |
11715A-H5 | VGB6 | C57BL/6NTac | |
11715A-F2 | VGB6 | C57BL/6NTac | |