Gene | Olig1 |
Chromosome | 16 |
Deletion Start | 91,269,880 |
Deletion End | 91,270,715 |
Deletion Size | 836 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 16
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 91,270,159 | 91,270,178 | CTGCGGCGCAAGATCAACAG |
TUP | 91,270,186 | 91,270,208 | CGGAAGCGCATGCAGGACCTGAA |
TUR | 91,270,231 | 91,270,253 | GCCGAGTAGGGTAGGATAACTTC |
TDF | 91,270,489 | 91,270,509 | CCCACCAAGTACCTGTCTCTA |
TDP | 91,270,513 | 91,270,532 | CTCGACGAGCCACCGTGCGG |
TDR | 91,270,578 | 91,270,598 | AACTTGCACACCGCACAGGAG |
PCR Primers
Primer | Sequence |
SU | ACTCTGGCTGTACCTCTGC |
SD | GCTCACGGATACGAGAATAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 95 bp | + | + | - |
TDF | TDR | 110 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11761A-B10 | VGB6 | C57BL/6NTac | |
11761A-C4 | VGB6 | C57BL/6NTac | |
11761A-D8 | VGB6 | C57BL/6NTac | |
11761A-C7 | VGB6 | C57BL/6NTac | |
11761A-A11 | VGB6 | C57BL/6NTac | |