Gene | Casc3 |
Chromosome | 11 |
Deletion Start | 98,809,867 |
Deletion End | 98,831,646 |
Deletion Size | 21,780 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 98,810,156 | 98,810,174 | ATGCCGGGCCTCCTCTTAG |
TUP | 98,810,179 | 98,810,204 | AAAGAAAGGTTGTCCCGCTGCGAATC |
TUR | 98,810,231 | 98,810,250 | TCAGAAACCACCCAGTCCTC |
TDF | 98,831,409 | 98,831,427 | AGGTACGGCTCCTCCCACT |
TDP | | | TCCTAGCATGTGGGTG |
TDR | 98,831,449 | 98,831,470 | GAAGACAGACCCTCTGGAGAAA |
PCR Primers
Primer | Sequence |
SU | AGAAGAGCTCGAAACCCTCC |
SD | AGAGCCACAGAGCCACTTTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 95 bp | + | + | - |
TDF | TDR | 62 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11788B-H10 | VGB6 | C57BL/6NTac | |
11788A-E8 | VGB6 | C57BL/6NTac | |