Gene | Lcat |
Chromosome | 8 |
Deletion Start | 105,943,405 |
Deletion End | 105,939,581 |
Deletion Size | 3,825 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 8
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 105,942,869 | 105,942,890 | TGGCCTCTGTCTTACCAAGAAC |
TUP | 105,942,838 | 105,942,863 | ACCCAGCCAGAGATACCCAGCTATCC |
TUR | 105,942,812 | 105,942,833 | ACAGACCTCTCCTGCTATCCTG |
TDF | 105,940,152 | 105,940,173 | CTCCCTGTCCCACCTTGTTCTC |
TDP | 105,940,123 | 105,940,146 | TCCTAGGTGACAACCAGGGCATCC |
TDR | 105,940,079 | 105,940,100 | GGTTATGCGCTGCTCCTCTTTC |
PCR Primers
Primer | Sequence |
SU | CCTGCTGCTCCGGCTCTTT |
SD | CTGAGCAGCTCAACTAGGAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 79 bp | + | + | - |
TDF | TDR | 95 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11806A-A2 | VGB6 | C57BL/6NTac | |
11806A-D3 | VGB6 | C57BL/6NTac | |
11806A-H11 | VGB6 | C57BL/6NTac | |
11806A-A10 | VGB6 | C57BL/6NTac | |