Gene | Stra13 |
Chromosome | 11 |
Deletion Start | 120,713,716 |
Deletion End | 120,711,246 |
Deletion Size | 2,471 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 120,712,820 | 120,712,840 | CCTCCTGGCCCAACTAACAAG |
TUP | 120,712,794 | 120,712,818 | TCACCTGTGCCTGTGTCCATTTCCA |
TUR | 120,712,741 | 120,712,760 | GAGCGTCAGCCACAGAGAAG |
TDF | 120,711,920 | 120,711,941 | ACAGACAGCCTTGTGAGGAATG |
TDP | 120,711,892 | 120,711,918 | CACTGACTCTGCCCTCCTTCTAGGAAC |
TDR | 120,711,859 | 120,711,880 | CCCTGAAGTGCAAATGGAGTAG |
PCR Primers
Primer | Sequence |
SU | TACCCTAGTCTGGCCCTGTG |
SD | AATGGCAAAGAGAAAGCAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 100 bp | + | + | - |
TDF | TDR | 83 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11949A-A2 | VGB6 | C57BL/6NTac | |
11949A-B4 | VGB6 | C57BL/6NTac | |
11949A-H12 | VGB6 | C57BL/6NTac | |
11949A-F10 | VGB6 | C57BL/6NTac | |
11949A-E5 | VGB6 | C57BL/6NTac | |
11949A-A7 | VGB6 | C57BL/6NTac | |