Gene | Aip |
Chromosome | 19 |
Deletion Start | 4,121,380 |
Deletion End | 4,114,482 |
Deletion Size | 6,899 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 19
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 4,121,363 | 4,121,383 | ATACAGGAGGGCCGAGGAGAG |
TUP | 4,121,340 | 4,121,362 | TTGCCGGACTTTCAGGATGGCAC |
TUR | 4,121,294 | 4,121,315 | CAGAAGAGACGCTGGGAAAGTG |
TDF | 4,115,118 | 4,115,142 | GGTGGCTCAGGAGTATTATGAAGTG |
TDP | 4,115,093 | 4,115,116 | TGGATCACTGCTCCTCCATCCTCA |
TDR | 4,115,035 | 4,115,053 | GGATGGGAAGAGGCCAGTC |
PCR Primers
Primer | Sequence |
SU | AGCCAACTAAGCACAACTGG |
SD | CTAGGCTGGTATTGGCCAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 90 bp | + | + | - |
TDF | TDR | 108 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11995A-A1 | VGB6 | C57BL/6NTac | |
11995A-B6 | VGB6 | C57BL/6NTac | |
11995A-C3 | VGB6 | C57BL/6NTac | |
11995A-E1 | VGB6 | C57BL/6NTac | |
11995A-E3 | VGB6 | C57BL/6NTac | |
11995A-E6 | VGB6 | C57BL/6NTac | |