Gene | Pih1d1 |
Chromosome | 7 |
Deletion Start | 45,156,313 |
Deletion End | 45,159,993 |
Deletion Size | 3,681 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 7
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 45,156,468 | 45,156,488 | GTGGCTTCAGTTCCCAGAGTG |
TUP | 45,156,490 | 45,156,510 | CCCATGGCAGCAGTGAGGCCT |
TUR | 45,156,523 | 45,156,543 | AGGAAACCTGAGGCAAACAAC |
TDF | 45,159,294 | 45,159,314 | ACCTGCTCTTGGCTGAAGTTG |
TDP | 45,159,315 | 45,159,340 | ACCTTCCTAAACTGGTGAGTGCAGGC |
TDR | 45,159,347 | 45,159,366 | CACTGGCTCTTCTCCCTGAC |
PCR Primers
Primer | Sequence |
SU | AGTTCCTTAGTTATACAGACG |
SD | AAGTAGAGTCAGCTCTGGAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 76 bp | + | + | - |
TDF | TDR | 73 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12006A-A4 | VGB6 | C57BL/6NTac | |
12006A-B6 | VGB6 | C57BL/6NTac | |
12006A-F5 | VGB6 | C57BL/6NTac | |
12006A-F2 | VGB6 | C57BL/6NTac | |