Gene | Accn3 |
Chromosome | 5 |
Deletion Start | 24,413,715 |
Deletion End | 24,417,765 |
Deletion Size | 4,051 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 24,413,949 | 24,413,968 | CGTGAGAGCCACCAGCTTAC |
TUP | 24,413,970 | 24,413,997 | TTCCCAGCTGTCACTTTGTGTAACATCA |
TUR | 24,414,011 | 24,414,030 | CATTGGGTGTGAGGCGTGAG |
TDF | 24,417,434 | 24,417,456 | GGCCCAGGAGCTATAAGTACAAC |
TDP | 24,417,462 | 24,417,482 | TGGCTGGTCTCCACCTGACCC |
TDR | 24,417,483 | 24,417,501 | CCTGGAGCTGTGGGAAGAG |
PCR Primers
Primer | Sequence |
SU | TGGTCTTTACTGCAGAGACC |
SD | CTCATCAACTCCTCACTAAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 82 bp | + | + | - |
TDF | TDR | 68 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12166A-A1 | VGB6 | C57BL/6NTac | |
12166A-B6 | VGB6 | C57BL/6NTac | |
12166A-E8 | VGB6 | C57BL/6NTac | |
12166A-E5 | VGB6 | C57BL/6NTac | |
12166A-F7 | VGB6 | C57BL/6NTac | |
12166A-G4 | VGB6 | C57BL/6NTac | |