Gene | Agtr2 |
Chromosome | X |
Deletion Start | 21,486,132 |
Deletion End | 21,487,226 |
Deletion Size | 1,095 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome X
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 21,486,150 | 21,486,167 | GCTGCCACCAGCAGAAAC |
TUP | 21,486,171 | 21,486,198 | ACCAGCAGCCGTCCTTTTGATAATCTCA |
TUR | 21,486,202 | 21,486,222 | CGGACTCATTGGTGCCAGTTG |
TDF | 21,486,905 | 21,486,926 | TGCTGTTGTGTTGGCATTCATC |
TDP | 21,486,930 | 21,486,954 | TGCTGGCTTCCCTTCCATGTTCTGA |
TDR | 21,486,956 | 21,486,977 | CCAGGTCAGAGCATCCAAGAAG |
PCR Primers
Primer | Sequence |
SU | ATGACTCCTACCCTGATTAAC |
SD | AGGGAGAAGTCTGAGATGTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 73 bp | + | + | - |
TDF | TDR | 73 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12224B-C1 | VGB6 | C57BL/6NTac | |
12224B-C11 | VGB6 | C57BL/6NTac | |
12224B-D10 | VGB6 | C57BL/6NTac | |
12224B-H10 | VGB6 | C57BL/6NTac | |
12224C-A5 | VGB6 | C57BL/6NTac | |
12224C-B9 | VGB6 | C57BL/6NTac | |