Gene | Rab13 |
Chromosome | 3 |
Deletion Start | 90,220,902 |
Deletion End | 90,225,653 |
Deletion Size | 4,752 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 90,221,305 | 90,221,327 | CGTCATTTCCATCTGCTTCCTTC |
TUP | 90,221,333 | 90,221,357 | CCCATCACTGCACCTAGACGCTCTA |
TUR | 90,221,399 | 90,221,419 | AGGTCAGTAAGAGGCCAACAC |
TDF | 90,224,891 | 90,224,909 | GCCGGAGATCGGTGAGTTG |
TDP | 90,224,916 | 90,224,937 | CTCGGGCTGAGTACCACTGCGC |
TDR | 90,224,948 | 90,224,966 | TCGCCAGTTGCTTCAGTTC |
PCR Primers
Primer | Sequence |
SU | AAGCCTTTGAATAGCGCCTC |
SD | TGAACCAATATCTTGGCGTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 115 bp | + | + | - |
TDF | TDR | 76 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12265A-F5 | VGB6 | C57BL/6NTac | |
12265A-A9 | VGB6 | C57BL/6NTac | |
12265A-H1 | VGB6 | C57BL/6NTac | |
12265A-B3 | VGB6 | C57BL/6NTac | |