Gene | Sema4c |
Chromosome | 1 |
Deletion Start | 36,556,037 |
Deletion End | 36,549,477 |
Deletion Size | 6,561 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 1
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 36,555,359 | 36,555,381 | AGGAGACAGAGTGAACCAGACAG |
TUP | 36,555,335 | 36,555,358 | CTCTCCTTTGCTTTCGCGCACACC |
TUR | 36,555,286 | 36,555,307 | CCCAGGAGCACAGAGATGATAC |
TDF | 36,549,718 | 36,549,738 | AGCCTCTGCCTTCTCCAACTC |
TDP | 36,549,684 | 36,549,710 | CCTAGGAGGTGGTCGGAACTCAAATGC |
TDR | 36,549,657 | 36,549,679 | CCCAACTGTAAACGCACATAACC |
PCR Primers
Primer | Sequence |
SU | CTTTAAGGCCAGAAGGAGCC |
SD | GCTCCAAAGACTCAACCAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 96 bp | + | + | - |
TDF | TDR | 82 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12277A-B9 | VGB6 | C57BL/6NTac | |
12277A-D5 | VGB6 | C57BL/6NTac | |
12277A-D7 | VGB6 | C57BL/6NTac | |
12277A-F1 | VGB6 | C57BL/6NTac | |
12277A-G5 | VGB6 | C57BL/6NTac | |
12277A-H2 | VGB6 | C57BL/6NTac | |