Gene | Ccdc160 |
Chromosome | X |
Deletion Start | 52,798,086 |
Deletion End | 52,799,076 |
Deletion Size | 991 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome X
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 52,798,194 | 52,798,214 | GCAGACAACCACAAGAGGATG |
TUP | 52,798,227 | 52,798,256 | AACTTCTCCGTTAGGAACACTCAAGAAGGA |
TUR | 52,798,275 | 52,798,298 | TTCTGCTATCTGGGAAGAATAGTC |
TDF | 52,798,917 | 52,798,938 | GCCATCAAGAATGAGCTGAGAG |
TDP | 52,798,939 | 52,798,965 | TCGAGAAGACCCTAAGGGTGAAGAACA |
TDR | 52,798,974 | 52,798,993 | TGTCTTCCAAGCACCTCCAG |
PCR Primers
Primer | Sequence |
SU | TTTCTGTGCATACAGGTGCC |
SD | ACAAGGTCACACAGTGCTGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 105 bp | + | + | - |
TDF | TDR | 77 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12295A-D3 | VGB6 | C57BL/6NTac | |
12295B-G9 | VGB6 | C57BL/6NTac | |
12295C-B8 | VGB6 | C57BL/6NTac | |