Gene | Hoxa11 |
Chromosome | 6 |
Deletion Start | 52,245,716 |
Deletion End | 52,243,359 |
Deletion Size | 2,358 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 52,245,030 | 52,245,047 | TCTTCCGGCCACACTGAG |
TUP | 52,245,000 | 52,245,022 | CCGGTGGCTCCGGTGCGTATAAA |
TUR | 52,244,952 | 52,244,970 | GCTGCGCTAGATTCCCAAC |
TDF | 52,243,884 | 52,243,903 | GCCTCCGTTCAAAGCAGTTC |
TDP | 52,243,859 | 52,243,880 | CAGCGCAAACTCGCCTGTTGCT |
TDR | 52,243,838 | 52,243,858 | GCTGAAAGGAAGGCTCCTCAC |
PCR Primers
Primer | Sequence |
SU | AAAGAAAGGAAGCCGAGGAG |
SD | AATCTCCAGTGACCACACCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 96 bp | + | + | - |
TDF | TDR | 66 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12354A-A11 | VGB6 | C57BL/6NTac | |
12354B-A4 | VGB6 | C57BL/6NTac | |
12354C-C9 | VGB6 | C57BL/6NTac | |
12354C-D7 | VGB6 | C57BL/6NTac | |