12354   Hoxa11     Status: ES cell clone microinjected

GeneHoxa11
Chromosome6
Deletion Start52,245,716
Deletion End52,243,359
Deletion Size2,358
Genome Build38
MGI IDMGI:96172
NCBI Gene ID15396
BAC ID232N12
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 6

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF52,245,03052,245,047TCTTCCGGCCACACTGAG
TUP52,245,00052,245,022CCGGTGGCTCCGGTGCGTATAAA
TUR52,244,95252,244,970GCTGCGCTAGATTCCCAAC
TDF52,243,88452,243,903GCCTCCGTTCAAAGCAGTTC
TDP52,243,85952,243,880CAGCGCAAACTCGCCTGTTGCT
TDR52,243,83852,243,858GCTGAAAGGAAGGCTCCTCAC

PCR Primers

PrimerSequence
SUAAAGAAAGGAAGCCGAGGAG
SDAATCTCCAGTGACCACACCC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR96 bp++-
TDFTDR66 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
12354A-A11VGB6C57BL/6NTac
12354B-A4VGB6C57BL/6NTac
12354C-C9VGB6C57BL/6NTac
12354C-D7VGB6C57BL/6NTac