Gene | Susd3 |
Chromosome | 13 |
Deletion Start | 49,248,129 |
Deletion End | 49,231,126 |
Deletion Size | 17,004 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 13
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 49,247,331 | 49,247,352 | GGAGGAAGCTGAGGATCTGTAG |
TUP | 49,247,303 | 49,247,328 | ACATTGCCCTCACCCTAGAGCAGTGC |
TUR | 49,247,279 | 49,247,298 | TCGCAGCATTATGACGGTTG |
TDF | 49,231,208 | 49,231,226 | GCCAGGCACCTACGTGATG |
TDP | 49,231,184 | 49,231,206 | TCCACGCGTTGAACTCTGCAGGG |
TDR | 49,231,136 | 49,231,157 | TCACCCTGGAAGGTACACTTTG |
PCR Primers
Primer | Sequence |
SU | GAGGCTGTCACTCTCCAAGG |
SD | CCCAGAAGATGATAAGGTGGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 74 bp | + | + | - |
TDF | TDR | 91 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12627A-G9 | VGB6 | C57BL/6NTac | |
12627A-G8 | VGB6 | C57BL/6NTac | |
12627A-F3 | VGB6 | C57BL/6NTac | |
12627A-E9 | VGB6 | C57BL/6NTac | |
12627A-G12 | VGB6 | C57BL/6NTac | |