Gene | Asrgl1 |
Chromosome | 19 |
Deletion Start | 9,135,551 |
Deletion End | 9,112,932 |
Deletion Size | 22,620 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 19
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 9,134,993 | 9,135,013 | GACACTCGCCTCTTCCTGATG |
TUP | 9,134,954 | 9,134,982 | ATCGATGTGAGTCTCGTGGTGGTAGTCCA |
TUR | 9,134,919 | 9,134,938 | TCCGGTTGGCTGAGATGTTG |
TDF | 9,113,310 | 9,113,333 | TCCAGTGAAGCCCATTCATATCTC |
TDP | 9,113,284 | 9,113,308 | CAGTGTCCCAAAGCAGTGGCATAGC |
TDR | 9,113,249 | 9,113,269 | TTTCAGAGGCTCCCATGTTTG |
PCR Primers
Primer | Sequence |
SU | AGGAGAGGAGCTGGGATTTC |
SD | TGAGCTTCACCTGGACCTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 95 bp | + | + | - |
TDF | TDR | 85 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12628A-E1 | VGB6 | C57BL/6NTac | |
12628A-G2 | VGB6 | C57BL/6NTac | |
12628A-D1 | VGB6 | C57BL/6NTac | |
12628A-F8 | VGB6 | C57BL/6NTac | |