Gene | Sds |
Chromosome | 5 |
Deletion Start | 120,479,084 |
Deletion End | 120,483,854 |
Deletion Size | 4,771 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 120,479,211 | 120,479,230 | GCATTGGGCATCTCTGCAAG |
TUP | 120,479,231 | 120,479,255 | ATGGTACAAGGCAGGGTGGCATCCT |
TUR | 120,479,286 | 120,479,304 | GCACACCTGCCTCTACAAC |
TDF | 120,482,898 | 120,482,919 | GCATTTGAGTCAGGCCAGTTTG |
TDP | 120,482,921 | 120,482,945 | TGCCCTAGACCACTGTGCAGGATCC |
TDR | 120,482,987 | 120,483,005 | GCATGTGAGAGGTGAGGAC |
PCR Primers
Primer | Sequence |
SU | TTGTGTCTGCTGACGTGCTC |
SD | CCACCCTAGATCCCTGTGTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 94 bp | + | + | - |
TDF | TDR | 108 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12764A-C9 | VGB6 | C57BL/6NTac | |
12764A-D5 | VGB6 | C57BL/6NTac | |
12764A-E8 | VGB6 | C57BL/6NTac | |
12764A-F5 | VGB6 | C57BL/6NTac | |