Gene | D10Wsu102e |
Chromosome | 10 |
Deletion Start | 83,360,262 |
Deletion End | 83,365,981 |
Deletion Size | 5,720 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 10
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 83,360,869 | 83,360,890 | CCAGGTGGTCCTTGTAGAGTTC |
TUP | 83,360,892 | 83,360,914 | TTAGGAACCGCCCAGCCTGGCAG |
TUR | 83,360,915 | 83,360,934 | TGCCTCTGCCTCTCCAAATG |
TDF | 83,365,790 | 83,365,811 | CTCGGAGTCCGAAGAAGATGTC |
TDP | 83,365,812 | 83,365,836 | TGCGTTCCCTCTGAAGTCACCATCG |
TDR | 83,365,853 | 83,365,873 | CCTTTGCCACCTTCTGCATTC |
PCR Primers
Primer | Sequence |
SU | ACCACCTTCTTCATGCTTGC |
SD | ACCGTCACACCTTAAATGGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 66 bp | + | + | - |
TDF | TDR | 84 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12795B-A1 | VGB6 | C57BL/6NTac | |
12795B-A11 | VGB6 | C57BL/6NTac | |
12795B-B7 | VGB6 | C57BL/6NTac | |
12795B-C4 | VGB6 | C57BL/6NTac | |
12795B-D8 | VGB6 | C57BL/6NTac | |
12795B-F4 | VGB6 | C57BL/6NTac | |