Gene | Deb1 |
Chromosome | 9 |
Deletion Start | 121,710,406 |
Deletion End | 121,712,687 |
Deletion Size | 2,282 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 121,710,617 | 121,710,636 | TTCTTCCTCGCCCGTCTTTC |
TUP | 121,710,637 | 121,710,663 | AGCTCCTGGAGGAGAATGACCAGCTGA |
TUR | 121,710,684 | 121,710,702 | TCGCTCGGCCCTTATTCTG |
TDF | 121,712,014 | 121,712,032 | AGGCAGGCCAAAGGTGCTG |
TDP | 121,712,037 | 121,712,059 | TCCTCAGGCATACCGAGGAGGCC |
TDR | 121,712,077 | 121,712,095 | CCTGTGGCTTTCCCTTCAC |
PCR Primers
Primer | Sequence |
SU | ACTGGAAGGAGCCTCTCAG |
SD | TGACATGGGACACTGAGGAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 86 bp | + | + | - |
TDF | TDR | 82 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12839A-A11 | VGB6 | C57BL/6NTac | |
12839A-D5 | VGB6 | C57BL/6NTac | |
12839A-E6 | VGB6 | C57BL/6NTac | |
12839A-D10 | VGB6 | C57BL/6NTac | |