Gene | U2af1l4 |
Chromosome | 7 |
Deletion Start | 30,563,359 |
Deletion End | 30,565,246 |
Deletion Size | 1,888 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 7
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 30,563,944 | 30,563,968 | CAACTTGTACCGGAATCCACAGAAC |
TUP | 30,563,970 | 30,563,995 | CAGCCCAAACTGCAGATGGATCACAC |
TUR | 30,564,012 | 30,564,031 | TGCCCAGTCCCTGAACTATC |
TDF | 30,564,650 | 30,564,673 | GCTTGAGTGTTTGATAGGGAGTTC |
TDP | 30,564,678 | 30,564,704 | TGATGGTGGCCTTCTCTGTCTTTAGGG |
TDR | 30,564,727 | 30,564,748 | GGGCCGTAGGTGCATAAAGTTG |
PCR Primers
Primer | Sequence |
SU | AAGACCCAAATGACAGACGC |
SD | GTGGGTTTCAATTACCAGGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 88 bp | + | + | - |
TDF | TDR | 99 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12944A-C4 | VGB6 | C57BL/6NTac | |
12944A-C9 | VGB6 | C57BL/6NTac | |
12944A-D3 | VGB6 | C57BL/6NTac | |
12944A-D8 | VGB6 | C57BL/6NTac | |