Gene | Akp3 |
Chromosome | 1 |
Deletion Start | 87,125,011 |
Deletion End | 87,127,968 |
Deletion Size | 2,958 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 1
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 87,125,725 | 87,125,743 | AGCCGCGAGATTCGACCAG |
TUP | 87,100,720 | 87,100,746 | TGCAACACCACATTTGGCAATGAGGTC |
TUR | 87,100,695 | 87,100,713 | TCTTGGCACGGTACATCAC |
TDF | 87,127,357 | 87,127,376 | GCAAGCCCTACACCTCCATC |
TDP | 87,127,378 | 87,127,400 | TGTATGGCAACGGCCCAGGCTAT |
TDR | 87,127,435 | 87,127,455 | CACCGCACTCACTGCTTTCAG |
PCR Primers
Primer | Sequence |
SU | GTTCTTCCAGGCCTACCTCC |
SD | ATGGATTCAAGCTCGGAGAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 25049 bp | + | + | - |
TDF | TDR | 99 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12977A-F12 | VGB6 | C57BL/6NTac | |
12977A-G4 | VGB6 | C57BL/6NTac | |