Gene | Clec4a4 |
Chromosome | 6 |
Deletion Start | 122,990,370 |
Deletion End | 123,024,139 |
Deletion Size | 33,770 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 122,991,232 | 122,991,251 | TACTGCAAGGGCCAGGATTG |
TUP | 122,991,253 | 122,991,278 | CCTAATTCCAGCACTGAGGAGGCAGA |
TUR | 122,991,316 | 122,991,340 | GGATGGTCTGCAACTCATTATGTAG |
TDF | 123,023,876 | 123,023,898 | TGATGCTCTTTCCTCCCTTACAG |
TDP | 123,023,900 | 123,023,921 | TTCTGGCACAAAGGTGAGCCCA |
TDR | 123,023,999 | 123,024,023 | TCACCTGACAAACTGAATTGTGTTC |
PCR Primers
Primer | Sequence |
SU | ACTGCGCGAGTTTATGTTTG |
SD | GAAAGGTGTTGTTAACCTTCTTTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 109 bp | + | + | - |
TDF | TDR | 148 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13052B-E6 | VGB6 | C57BL/6NTac | |
13052B-F4 | VGB6 | C57BL/6NTac | |