Gene | Tex2 |
Chromosome | 11 |
Deletion Start | 106,568,599 |
Deletion End | 106,544,181 |
Deletion Size | 24,419 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 106,568,097 | 106,568,119 | CCACTGTCTTCTCCTTCCAAGTC |
TUP | 106,568,071 | 106,568,093 | TGTCCTGTCCTCCAGTGCCTCGT |
TUR | 106,568,002 | 106,568,021 | TTGGCTCCACCTCAGTTGAC |
TDF | 106,544,775 | 106,544,798 | GCTTCATGTGAGATGGCATCTTTG |
TDP | 106,544,748 | 106,544,771 | TGCCCTGAGCTGTCCATGAACAGT |
TDR | 106,544,690 | 106,544,710 | GTCAGGGTGGAGCTGTGAATG |
PCR Primers
Primer | Sequence |
SU | TGCAAGTGAGACAGATTGTTG |
SD | TGTGGGACCTTTGTAGACAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 118 bp | + | + | - |
TDF | TDR | 109 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13057A-D10 | VGB6 | C57BL/6NTac | |
13057A-F5 | VGB6 | C57BL/6NTac | |
13057A-G4 | VGB6 | C57BL/6NTac | |
13057A-C1 | VGB6 | C57BL/6NTac | |