Gene | 0610007L01Rik |
Chromosome | 5 |
Deletion Start | 130,229,471 |
Deletion End | 130,241,335 |
Deletion Size | 11,865 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 130,229,800 | 130,229,819 | TGCTGGGATTATGCGTTGTG |
TUP | 130,229,823 | 130,229,852 | CACCACATCTGGACTGTTCTTTCTGAGACA |
TUR | 130,229,860 | 130,229,878 | AGGGCAGCTTGGGCTTCAG |
TDF | 130,240,633 | 130,240,653 | CACAGAAGTCATGCAGCAGAG |
TDP | 130,240,655 | 130,240,683 | ACCTATCAGGGCCAACTAACTAGTGGCTA |
TDR | 130,240,685 | 130,240,708 | CACTGTACTAACCAAGCCACATCC |
PCR Primers
Primer | Sequence |
SU | TTCTAGTCTTCCAAATGAGCTC |
SD | AAGAACCACAGCAAACCTCG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 79 bp | + | + | - |
TDF | TDR | 76 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13171A-C5 | VGB6 | C57BL/6NTac | |
13171A-H6 | VGB6 | C57BL/6NTac | |
13171A-B11 | VGB6 | C57BL/6NTac | |
13171A-G4 | VGB6 | C57BL/6NTac | |