Gene | Dner |
Chromosome | 1 |
Deletion Start | 84,695,725 |
Deletion End | 84,695,458 |
Deletion Size | 268 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 1
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | | | CGTGCTGGCCCTGCTG |
TUP | 84,695,649 | 84,695,668 | CCCCTGCTGCTGGGTGCTGG |
TUR | | | GCGGACACCGGGCTA |
TDF | 84,695,525 | 84,695,543 | TTCGGTGACCGACCAAGAG |
TDP | 84,695,504 | 84,695,524 | CACCCTGCGGCCGATGCTGAG |
TDR | 84,695,468 | 84,695,486 | AGAGACCCCAGCGGGACAG |
PCR Primers
Primer | Sequence |
SU | CCAGCATCACCTCTCTCTCC |
SD | ATGACAGATCCACGAGTACC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TDF | TDR | 76 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
13226A-C9 | VGB6 | C57BL/6NTac | |